yxkD [2019-06-27 13:44:07]

unknown

locus: BSU38840

pI: 8.61

mw: 30.58 kDa

protein length: 278 aa

gene length: 837 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 3,987,927 3,988,763

The protein

Protein family

• [SW|UPF0750 membrane proteins]

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]
  description: [Pubmed|10746760]

  regulation

  • induced in the presence of guanidine ([SW|ykkC riboswitch]) [Pubmed|27989440]

  additional information

  • term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of ''yxkD'' [Pubmed|27120414]

Biological materials

Mutant

• MGNA-B738 (yxkD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1737 NBRP B. subtilis, Japan]
• BKE38840 ([gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38840 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACGAAAACACTCCTTT, downstream forward: _UP4_TAAAGAAAAATCCCTCTGTA
• BKK38840 ([gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38840 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACGAAAACACTCCTTT, downstream forward: _UP4_TAAAGAAAAATCCCTCTGTA

References

Reviews

• 28060483

Original publications

• 15096624,10746760,21317561,27120414,27989440